I have never seen the creatures to respawn again, once they were killed in standard combat.
33 Answers
In addition to repopulation in a very few areas (as mentioned by Aegis), you also get experience points and looting them yields materials. The bombs regenerate when you meditate, so for me it's an easy choice.
2Some areas where the ghoul nests are will become repopulated with people again once the nests are cleared out. You'll know this because a cutscene will trigger with people returning to that area.
4If you're in it for achievements, there's one linked to destroying all the monster nests in a region.